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Please note that the purpose of this tutorial is instructional, to build a membrane protein system and also to understand GROMACS force field organization ...
Missing: video ‎| Must include: video
The protein we will be working with is the KALP model peptide, denoted KALP15, which has a sequence of: Ac-GKK(LA)4LKKA-NH2. The protocol described here is ...
by JA LemkulCited by 10This tutorial will guide the user through the preparation and simulation of a simple membrane protein, in this case. KALP15, in a model membrane, DPPC.
11 pages·3 MB
29 Jun 20181. Workshops and Teaching Materials · 2. General GROMACS Use · 3. Protein-Ligand Systems · 4. Free Energy Calculations · 5. Membrane Simulations · 6.
Note: This content has a new home at https://training.galaxyproject.org/ ... This guide is based on the GROMACS tutorial provided by Justin Lemkul here ...
Missing: videoKALP15DPPC
Teaching. Contents [hide]. 1 Gromacs tutorial; 2 Simulation examples ... 7 Statistical Mechanics and Simulations; 8 ChE 524 video lectures ...
Missing: KALP15DPPC
0874. top Input, Opt. This is a video tutorial of our existing article on GROMACS (Abraham, et al. Paper in PNAS. hide. Umbrella Sampling: Also somewhat ...
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